BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB012B12SP1|AL426329
(803 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig658 1474 0.0
>3x_Contig658
Length = 2378
Score = 1474 bits (727), Expect = 0.0
Identities = 769/801 (96%)
Strand = Plus / Minus
Query: 3 caaaccgtttcttggagaacaagagtccttttattcatggattggttgaagagaggtatg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 caaaccgtttcttggagaacaagagtccttttattcatggattggttgaagagaggtatg 943
Query: 63 tttggtagagatattctcagtgaatgattaatgcgttacattcaatgagcccactgatgt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tttggtagagatattctcagtgaatgattaatgcgttacattcaatgagcccactgatgt 883
Query: 123 attaaactaatacttgtaaaacccccaatgaaggaatcatccagagaagtggaataaaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 attaaactaatacttgtaaaacccccaatgaaggaatcatccagagaagtggaataaaag 823
Query: 183 ttaaaagctaccaaaaaaaaaaaaaaaaaaacaagagaaaaataaaagatgaaatatcaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 ttaaaagctaccaaaaaaaaaaaaaaaaaaacaagagaaaaataaaagatgaaatatcaa 763
Query: 243 gaaagagccagagttactggaattcaatcccatctcaactccaactactattgamaactt 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 762 gaaagagccagagttactggaattcaatcccatctcaactccaactactattgaaaactt 703
Query: 303 taatcccataataattwmctawtgtcctgtwacgwttgtctcatkttttcttttattcat 362
|||||||||||||||| ||| |||||||| ||| ||||||||| |||||||||||||||
Sbjct: 702 taatcccataataattaactaatgtcctgtaacgattgtctcatgttttcttttattcat 643
Query: 363 aaatgamcaacatggatgamatgaaaatmaaagaagaagaagaagangaaatwwtawttc 422
|||||| |||||||||||| |||||||| ||||||||||||||||| ||||| || |||
Sbjct: 642 aaatgaacaacatggatgaaatgaaaataaaagaagaagaagaagaagaaataataattc 583
Query: 423 tcttagagattttwatgaactatactattgataaatctgaattccctkacgtaaccctga 482
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 582 tcttagagattttaatgaactatactattgataaatctgaattcactgacgtaaccctga 523
Query: 483 catacaaaatgtgtttggngtttgahtccttawtcgmhacatgtgttacgtattatgcct 542
|||||||||||||||||| |||||| |||||| ||| ||||||||||||||||||||||
Sbjct: 522 catacaaaatgtgtttggagtttgaatccttaatcgaaacatgtgttacgtattatgcct 463
Query: 543 athttcctttataaatgataaagatgttttatcaatgatgatcatagatatcgatatttt 602
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 atattcctttataaatgataaagatgttttatcaatgatgatcatagatatcgatatttt 403
Query: 603 ccgtcctwttagwcctggtgamatttcctgcctggvatgataacataagtgtggggttgt 662
||||||| |||| ||||||| || |||||| ||| ||||||||||||||||||||||||
Sbjct: 402 ccgtcctattagaactggtgaaatatcctgcatggaatgataacataagtgtggggttgt 343
Query: 663 aagcatagcaccattttcatgccgtcacattagctgctcatttttttttttgkggkccta 722
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 342 aagcatagcaccattttcatgccgtcacattagctgctcatttttttttttgtggtccta 283
Query: 723 tcccgttgtctcattgcaaatcaatttaatctgacatctgtcgacgacacaaaaaacttg 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tcccgttgtctcattgcaaatcaatttaatctgacatctgtcgacgacacaaaaaacttg 223
Query: 783 acacaaagttgaaaataaatt 803
|||||||||||||||||||||
Sbjct: 222 acacaaagttgaaaataaatt 202
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.715 1.33
Gapped
Lambda K H
1.41 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,356
Number of Sequences: 1807
Number of extensions: 25356
Number of successful extensions: 5459
Number of sequences better than 1.0e-20: 1
length of query: 803
length of database: 10,358,551
effective HSP length: 16
effective length of query: 787
effective length of database: 10,329,639
effective search space: 8129425893
effective search space used: 8129425893
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.8 bits)